Activities, discussion leader, and required discussion readings

Readings

August 17

Introduction to course; Population growth and regulation  (PPT)

General syllabus

Reading the literature (pdf)

Homework 0 (timescale issues: fluctuations in K) -- read the HW00 xls and then either use the Excel simulation or the shinyapp.

[All homework, unless stated differently in class, is due by 10am the day we go over it in class.]

Review general ecology text on population growth and density-dependence or read Ch1&2 of Gotelli

Other useful resources:

--EcoEvoApps (web-based simulations for various ecological and evolutionary systems)
--McPeek's coexistence modules
--Corrections and webapps for Community Ecology (Mittelbach and McGill)

 

August 19

Pop growth, continued

go over HW0

HW 1 (Ricker analysis)

same as above

 

 

August 24

Demographic and environmental stochasticity and demographic heterogeneity (PPT);

Go over HW1

same as above

A useful resource:

Global Population Dynamics Database (GPDD)

August 26

Stage-structured dynamics (PPT)

HW2 (Proj matrix)

Gotelli: Ch 3

August 31

Applications: Stage-structure Part II (PPT)

Go over HW2

Gotelli: Ch 4

Mittelbach and McGill - Ch 12 (pp 249-257)

Ancillary reading:

Crouse et al. (1987)

September 02

Metapopulations  (PPT)

Class discussion: (led by Craig)

Vonesh and de la Cruz 2002 (pdf)

For this and all future readings, please email responses to these prompts by 9am the day of discussion to Craig and the Discussion leaders:

1. What is the primary take-home message of the paper?

2. What is one issue/approach/question/confusion raised in the paper that you found "unsatisfying" or with which you disagreed?

3. Explain your answer to #2.

4. Identify one insight from the paper that changed your perspective about ecology?

See previous class

A useful resource:

Matrix Database (COM(P)ADRE)

September 07

UGA Holiday -- Labor Day

NA

NA

September 09

Metabolic Theory of Ecology

HW3  (metapop)

Class discussion -- Discussion leaders: Alivia, Sean

Peres et al. 2003 (PDF)

Brown et al. 2004 - MacArthur Address (PDF)

Ancillary:

Brown et al. 2004 - Special Feature (responses to above paper) (PDF)
Bernhardt et al. (2018)

 

 

September 14

Foraging theory  (PPT)

go over HW3

Stephens and Krebs 1986 - Ch 2 (PDF)
Charnov 1976 (PDF)
Mittelbach and McGill - Ch 6

Ancillary readings:

Mittelbach 1981 (PDF)
Osenberg and Mittelbach 1989 (PDF)

September 16

Habitat quality, Cryptic density-dependence, Ideal Free Distribution  (PPT)

HW4  (source-sink & OFT)

Class discussion -- Abby, Zak

Fox et al 2017 (pdf)

Shima and Osenberg 2003 (PDF)

September 21

Evolution (PPT)

go over HW4

 

Drake (chapter); you also should review basics from other sources

September 23

Exam 1 (take it)

HW5  (pop gen)

None

September 28

Species interactions

go over  Exam 1 and HW5

None today

September 30

Competition / Lotka-Volterra  (PPT)
Resource-based competition  (PPT)

Class discussion -- Anderson, Elizabeth

Johnston and Post 2009 (PDF)

HW05b (Lotka-Volterra)

Gotelli - Ch 5 (PDF) and/or Mittelbach and McGill - Ch 7

Tilman 1982 - Ch 3 & 4 (PDF); and/or Mittelbach and McGill - Ch 7

Ancillary Reading: 

Tilman 1977 (PDF)

October 05

Resource-based competition - continued (PPT)
Competition Experiments (PPT) 

 

Go over HW05b

nothing new

October 07

Predator-prey dynamics (PPT)

Class discussion -- Alivia, Nia

Miller 1994 (PDF)

HW6 (ZNGIs)

Mittelbach and McGill - Ch 5

Ancillary reading: 

Gotelli - Ch 6 (PDF)

 

October 12

Predator-prey (data, additional factors) (PPT

go over HW06

same as above

October 14

Coexistence mechanisms (PPT)

 

Class discussion -- Emily, Sean

Hatton et al 2024 (just parts of it) (PDF)

HW7  (pred-prey & phase planes)

Mittelbach and McGill (Ch 8 (all) & 15 (pp 287-297)

Ancillary reading:

McPeek 2012 (PDF)

Tilman 1982 - Ch 5 (PDF)

Chesson 2000 (PDF)

Chesson 2008 (PDF)

 

October 19

Coexistence (continued)

go over HW7

same as above

October 21

Disease ecology (PPT)

Class discussion -- Craig

Arditi & Saiah 1992 (PDF) -- please also skim Arditi et al. 1991

HW8  (primary paper summary)

Drake chapter on disease ecology (PDF)

October 26

Indirect effects and higher order interactions (PPT)

Guest Lecturer: Kelsey Vaughn

Mittelbach and McGill (pp 136-138; Ch 10 & 11)

Ancillary reading:

Wootton 1994 (PDF)

October 28

Exam 2 (take it)

Class discussion -- none

HW9 (SIR)

none

November 02

HSS, Oksanen, trophic cascades (PPT)

go over HW 9 and Exam 2

Mittelbach - Ch 11 (PDF)

Ancillary reading:

Hairston et al 1960 (PDF)

Oksanen et al. 1981 (PDF)

Osenberg and Mittelbach 1996 (PDF)

November 04

Alternative stable states, tipping points, and phase shifts (PPT)

Class discussion -- Abby, Elizabeth

Davis et al 2010 (PDF)

HW10 (1pred-2prey dynamics)

Mittelbach - Ch 14 (PDF)

Ancillary reading:

Scheffer and Carpenter 2003 (PDF)

November 09

Biodiversity and ecosystem function  (PPT)

go over HW10

Mittelbach - Ch 2 & 3 (PDF)

November 11

Communities in space  (PPT)

Class discussion -- Nia, Zak

Fox 2023 (PDF)

HW11 (cool papers) & HW12 (exam questions)

Mittelbach - Ch 13 (PDF)

November 16

NA

Presentations of the "most interesting papers"  (HW11; PPT)

None

November 18

NA

Class discussion -- Anderson, Emily

Frund et al 2013 (PDF)

Presentations of the "most interesting papers"  (HW11; PPT)

None (other than for discussion)

November 23

UG Holiday - Thanksgiving

NA

None

November 25

UGA Holiday - Thanksgiving

None

NA

November 30

Exam 3 (take it)

NA