ECOL 8910: Perspectives in Computational Ecology

Spring 2017: Multi-scale Modeling

ECOL 8910: Perspectives in Computational Ecology

Readings

  1. Begon, M., M. Bennett, R. G. Bowers, N. P. French, S. M. Hazel, and J. Turner. 2002. “A clarification of transmission terms in host-microparasite models: numbers, densities and areas.” Epidemiology and Infection 129 (01). Cambridge University Press: 147–53. doi:10.1017/S0950268802007148.
  2. Black, Andrew J., and Alan J. McKane. 2012. “Stochastic formulation of ecological models and their applications.” Trends in Ecology & Evolution 27 (6): 337–45. doi:10.1016/j.tree.2012.01.014.
  3. Boerlijst, Maarten C., Marcel E. Lamers, and Pauline Hogeweg. 1993. “Evolutionary Consequences of Spiral Waves in a Host–Parasitoid System.” Proceedings of the Royal Society of London B: Biological Sciences 253 (1336).
  4. Crawley, Michael J. 2007. The R Book. Wiley-Blackwell. doi:10.1002/9780470515075.
  5. Earn, David J. D., Simon A. Levin, and Pejman Rohani. 2000. “Coherence and Conservation.” Science 290 (5495).
  6. Keeling, Matt J. 2000. “Metapopulation moments: coupling, stochasticity and persistence.” Journal of Animal Ecology 69 (5). Blackwell Science Ltd: 725–36. doi:10.1046/j.1365-2656.2000.00430.x.
  7. Klausmeier, Christopher A. 1999. “Regular and Irregular Patterns in Semiarid Vegetation.” Science 284 (5421).
  8. Kot, Mark, Mark A. Lewis, and P. van den Driessche. 1996. “Dispersal Data and the Spread of Invading Organisms.” Ecology 77 (7). Ecological Society of America: 2027–42. doi:10.2307/2265698.
  9. Meier-Schellersheim, Martin, Iain D. C. Fraser, and Frederick Klauschen. 2009. “Multiscale modeling for biologists.” Wiley Interdisciplinary Reviews: Systems Biology and Medicine 1 (1). John Wiley & Sons, Inc.: 4–14. doi:10.1002/wsbm.33.
  10. Melbourne, Brett A., and Peter Chesson. 2005. “Scaling up population dynamics: integrating theory and data.” Oecologia 145 (2). Springer-Verlag: 178–86. doi:10.1007/s00442-005-0058-8.
  11. Mideo, Nicole, Samuel Alizon, and Troy Day. 2008. “Linking within- and between-host dynamics in the evolutionary epidemiology of infectious diseases.” Trends in Ecology & Evolution 23 (9): 511–17. doi:10.1016/j.tree.2008.05.009.
  12. Rinaldi, Sergio, and Marten Scheffer. 2000. “Geometric Analysis of Ecological Models with Slow and Fast Processes.” Ecosystems 3 (6). Springer-Verlag: 507–21. doi:10.1007/s100210000045.
  13. Sofonea, Mircea T., Samuel Alizon, and Yannis Michalakis. 2015. “From within-host interactions to epidemiological competition: a general model for multiple infections.” Philosophical Transactions of the Royal Society of London B: Biological Sciences 370 (1675).