{"id":223,"date":"2016-08-04T13:49:40","date_gmt":"2016-08-04T17:49:40","guid":{"rendered":"http:\/\/courses.ecology.uga.edu\/ecol8000-fall2017\/?page_id=223"},"modified":"2017-11-16T12:02:37","modified_gmt":"2017-11-16T16:02:37","slug":"assembly","status":"publish","type":"page","link":"https:\/\/courses.ecology.uga.edu\/ecol8000-fall2017\/inference-module\/assembly\/","title":{"rendered":"Community structure and assembly across scales"},"content":{"rendered":"<div id=\"pl-223\"  class=\"panel-layout\" ><div id=\"pg-223-0\"  class=\"panel-grid panel-no-style\" ><div id=\"pgc-223-0-0\"  class=\"panel-grid-cell\" ><div id=\"panel-223-0-0-0\" class=\"so-panel widget widget_black-studio-tinymce widget_black_studio_tinymce panel-first-child panel-last-child\" data-index=\"0\" ><div class=\"textwidget\"><h4>This module will focus on the role of niche vs. neutral processes in community assembly, and explore how analyses of diversity across scales in observational datasets may be used to make inferences about mechanisms structuring ecological communities.<\/h4>\n<\/div><\/div><\/div><\/div><div id=\"pg-223-1\"  class=\"panel-grid panel-has-style\" ><div class=\"panel-row-style panel-row-style-for-223-1\" ><div id=\"pgc-223-1-0\"  class=\"panel-grid-cell\" ><div id=\"panel-223-1-0-0\" class=\"so-panel widget widget_black-studio-tinymce widget_black_studio_tinymce panel-first-child panel-last-child\" data-index=\"1\" ><div class=\"textwidget\"><p>Date<\/p>\n<\/div><\/div><\/div><div id=\"pgc-223-1-1\"  class=\"panel-grid-cell\" ><div id=\"panel-223-1-1-0\" class=\"so-panel widget widget_black-studio-tinymce widget_black_studio_tinymce panel-first-child panel-last-child\" data-index=\"2\" ><div class=\"textwidget\"><p>Activity and Goals<\/p>\n<\/div><\/div><\/div><div id=\"pgc-223-1-2\"  class=\"panel-grid-cell\" ><div id=\"panel-223-1-2-0\" class=\"so-panel widget widget_black-studio-tinymce widget_black_studio_tinymce panel-first-child panel-last-child\" data-index=\"3\" ><div class=\"textwidget\"><p>Reading and homework<\/p>\n<\/div><\/div><\/div><\/div><\/div><div id=\"pg-223-2\"  class=\"panel-grid panel-has-style\" ><div class=\"panel-row-style panel-row-style-for-223-2\" ><div id=\"pgc-223-2-0\"  class=\"panel-grid-cell\" ><div id=\"panel-223-2-0-0\" class=\"so-panel widget widget_black-studio-tinymce widget_black_studio_tinymce panel-first-child panel-last-child\" data-index=\"4\" ><div class=\"textwidget\"><p>Thursday, Nov 2<\/p>\n<\/div><\/div><\/div><div id=\"pgc-223-2-1\"  class=\"panel-grid-cell\" ><div id=\"panel-223-2-1-0\" class=\"so-panel widget widget_black-studio-tinymce widget_black_studio_tinymce panel-first-child panel-last-child\" data-index=\"5\" ><div class=\"textwidget\"><p>Communities, niches, Clements, Gleason, Hutchinson, Tilman, Hubbell. Review of people, definitions and ideas. Plant cover community matrix: <a href=\"http:\/\/courses.ecology.uga.edu\/ecol8000-fall2017\/wp-content\/uploads\/sites\/17\/2017\/11\/SNPplants.csv\">SNPplants<\/a><\/p>\n<p>Slides:\u00a0<a href=\"http:\/\/courses.ecology.uga.edu\/ecol8000-fall2017\/wp-content\/uploads\/sites\/17\/2017\/11\/Nov-2-slides.pdf\">Nov 2 slides<\/a><\/p>\n<\/div><\/div><\/div><div id=\"pgc-223-2-2\"  class=\"panel-grid-cell\" ><div id=\"panel-223-2-2-0\" class=\"so-panel widget widget_black-studio-tinymce widget_black_studio_tinymce panel-first-child panel-last-child\" data-index=\"6\" ><div class=\"textwidget\"><\/div><\/div><\/div><\/div><\/div><div id=\"pg-223-3\"  class=\"panel-grid panel-has-style\" ><div class=\"panel-row-style panel-row-style-for-223-3\" ><div id=\"pgc-223-3-0\"  class=\"panel-grid-cell\" ><div id=\"panel-223-3-0-0\" class=\"so-panel widget widget_black-studio-tinymce widget_black_studio_tinymce panel-first-child panel-last-child\" data-index=\"7\" ><div class=\"textwidget\"><p>Tuesday, Nov 7<\/p>\n<\/div><\/div><\/div><div id=\"pgc-223-3-1\"  class=\"panel-grid-cell\" ><div id=\"panel-223-3-1-0\" class=\"so-panel widget widget_black-studio-tinymce widget_black_studio_tinymce panel-first-child panel-last-child\" data-index=\"8\" ><div class=\"textwidget\"><p>Paper discussion 1<\/p><p>\u00a0\u00a0<\/p><\/div><\/div><\/div><div id=\"pgc-223-3-2\"  class=\"panel-grid-cell\" ><div id=\"panel-223-3-2-0\" class=\"so-panel widget widget_black-studio-tinymce widget_black_studio_tinymce panel-first-child panel-last-child\" data-index=\"9\" ><div class=\"textwidget\"><p>Reading: <a href=\"http:\/\/courses.ecology.uga.edu\/ecol8000-fall2017\/readings\/\">Chase and Myers (2011)<\/a><\/p>\n<\/div><\/div><\/div><\/div><\/div><div id=\"pg-223-4\"  class=\"panel-grid panel-has-style\" ><div class=\"panel-row-style panel-row-style-for-223-4\" ><div id=\"pgc-223-4-0\"  class=\"panel-grid-cell\" ><div id=\"panel-223-4-0-0\" class=\"so-panel widget widget_black-studio-tinymce widget_black_studio_tinymce panel-first-child panel-last-child\" data-index=\"10\" ><div class=\"textwidget\"><p>Thursday, Nov 9<\/p>\n<\/div><\/div><\/div><div id=\"pgc-223-4-1\"  class=\"panel-grid-cell\" ><div id=\"panel-223-4-1-0\" class=\"so-panel widget widget_black-studio-tinymce widget_black_studio_tinymce panel-first-child panel-last-child\" data-index=\"11\" ><div class=\"textwidget\"><p>Paper discussion 2<\/p>\n<\/div><\/div><\/div><div id=\"pgc-223-4-2\"  class=\"panel-grid-cell\" ><div id=\"panel-223-4-2-0\" class=\"so-panel widget widget_black-studio-tinymce widget_black_studio_tinymce panel-first-child panel-last-child\" data-index=\"12\" ><div class=\"textwidget\"><p>Reading: <a href=\"http:\/\/courses.ecology.uga.edu\/ecol8000-fall2017\/readings\/\">Leibold and Mikkelson (2002)<\/a><\/p>\n<\/div><\/div><\/div><\/div><\/div><div id=\"pg-223-5\"  class=\"panel-grid panel-has-style\" ><div class=\"panel-row-style panel-row-style-for-223-5\" ><div id=\"pgc-223-5-0\"  class=\"panel-grid-cell\" ><div id=\"panel-223-5-0-0\" class=\"so-panel widget widget_black-studio-tinymce widget_black_studio_tinymce panel-first-child panel-last-child\" data-index=\"13\" ><div class=\"textwidget\"><p>Tuesday, Nov 14<\/p>\n<\/div><\/div><\/div><div id=\"pgc-223-5-1\"  class=\"panel-grid-cell\" ><div id=\"panel-223-5-1-0\" class=\"so-panel widget widget_black-studio-tinymce widget_black_studio_tinymce panel-first-child panel-last-child\" data-index=\"14\" ><div class=\"textwidget\"><p>Paper discussion 3<\/p>\n<\/div><\/div><\/div><div id=\"pgc-223-5-2\"  class=\"panel-grid-cell\" ><div id=\"panel-223-5-2-0\" class=\"so-panel widget widget_black-studio-tinymce widget_black_studio_tinymce panel-first-child panel-last-child\" data-index=\"15\" ><div class=\"textwidget\"><p>Reading group 1:<a href=\"http:\/\/courses.ecology.uga.edu\/ecol8000-fall2017\/readings\/\">Ricklefs (2008)<\/a><\/p>\n<p>Reading group 2: <a href=\"http:\/\/courses.ecology.uga.edu\/ecol8000-fall2017\/readings\/\">Brooker et al. (2009)<\/a><\/p>\n<\/div><\/div><\/div><\/div><\/div><div id=\"pg-223-6\"  class=\"panel-grid panel-has-style\" ><div class=\"panel-row-style panel-row-style-for-223-6\" ><div id=\"pgc-223-6-0\"  class=\"panel-grid-cell\" ><div id=\"panel-223-6-0-0\" class=\"so-panel widget widget_black-studio-tinymce widget_black_studio_tinymce panel-first-child panel-last-child\" data-index=\"16\" ><div class=\"textwidget\"><p>Thursday, Nov 16<\/p>\n<\/div><\/div><\/div><div id=\"pgc-223-6-1\"  class=\"panel-grid-cell\" ><div id=\"panel-223-6-1-0\" class=\"so-panel widget widget_black-studio-tinymce widget_black_studio_tinymce panel-first-child panel-last-child\" data-index=\"17\" ><div class=\"textwidget\"><p>Working with actual data. The \u2018Elements of metacommunity Structure\u2019 approach of Liebold and Mikkelson (2002) will be applied to three datasets using <a href=\"https:\/\/cran.r-project.org\/web\/packages\/metacom\/metacom.pdf\">R package <i>metacom<\/i><\/a>.<\/p>\n<p><a href=\"http:\/\/courses.ecology.uga.edu\/ecol8000-fall2017\/wp-content\/uploads\/sites\/17\/2016\/08\/culi_data.csv\">data (culi)<\/a><\/p>\n<p><a href=\"http:\/\/courses.ecology.uga.edu\/ecol8000-fall2017\/wp-content\/uploads\/sites\/17\/2016\/08\/F41.csv\">data(F41)<\/a><\/p>\n<p><a href=\"http:\/\/courses.ecology.uga.edu\/ecol8000-fall2017\/wp-content\/uploads\/sites\/17\/2016\/08\/SNP_hotspots.csv\">data(SNP hotspots)<\/a><\/p>\n<\/div><\/div><\/div><div id=\"pgc-223-6-2\"  class=\"panel-grid-cell\" ><div id=\"panel-223-6-2-0\" class=\"so-panel widget widget_black-studio-tinymce widget_black_studio_tinymce panel-first-child panel-last-child\" data-index=\"18\" ><div class=\"textwidget\"><\/div><\/div><\/div><\/div><\/div><div id=\"pg-223-7\"  class=\"panel-grid panel-has-style\" ><div class=\"panel-row-style panel-row-style-for-223-7\" ><div id=\"pgc-223-7-0\"  class=\"panel-grid-cell\" ><div id=\"panel-223-7-0-0\" class=\"so-panel widget widget_black-studio-tinymce widget_black_studio_tinymce panel-first-child panel-last-child\" data-index=\"19\" ><div class=\"textwidget\"><p>Tuesday, Nov 28<\/p>\n<\/div><\/div><\/div><div id=\"pgc-223-7-1\"  class=\"panel-grid-cell\" ><div id=\"panel-223-7-1-0\" class=\"so-panel widget widget_black-studio-tinymce widget_black_studio_tinymce panel-first-child panel-last-child\" data-index=\"20\" ><div class=\"textwidget\"><p>Brief presentations on findings of data analysis.<\/p>\n<\/div><\/div><\/div><div id=\"pgc-223-7-2\"  class=\"panel-grid-cell\" ><div id=\"panel-223-7-2-0\" class=\"so-panel widget widget_black-studio-tinymce widget_black_studio_tinymce panel-first-child panel-last-child\" data-index=\"21\" ><div class=\"textwidget\"><\/div><\/div><\/div><\/div><\/div><\/div>","protected":false},"excerpt":{"rendered":"<p>This module will focus on the role of niche vs. neutral processes in community assembly, and explore how analyses of diversity across scales in observational datasets may be used to make inferences about mechanisms structuring ecological communities. Date Activity and Goals Reading and homework<\/p>\n","protected":false},"author":4,"featured_media":0,"parent":43,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"full-width-page.php","meta":{"footnotes":""},"class_list":["post-223","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/courses.ecology.uga.edu\/ecol8000-fall2017\/wp-json\/wp\/v2\/pages\/223","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/courses.ecology.uga.edu\/ecol8000-fall2017\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/courses.ecology.uga.edu\/ecol8000-fall2017\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/courses.ecology.uga.edu\/ecol8000-fall2017\/wp-json\/wp\/v2\/users\/4"}],"replies":[{"embeddable":true,"href":"https:\/\/courses.ecology.uga.edu\/ecol8000-fall2017\/wp-json\/wp\/v2\/comments?post=223"}],"version-history":[{"count":47,"href":"https:\/\/courses.ecology.uga.edu\/ecol8000-fall2017\/wp-json\/wp\/v2\/pages\/223\/revisions"}],"predecessor-version":[{"id":472,"href":"https:\/\/courses.ecology.uga.edu\/ecol8000-fall2017\/wp-json\/wp\/v2\/pages\/223\/revisions\/472"}],"up":[{"embeddable":true,"href":"https:\/\/courses.ecology.uga.edu\/ecol8000-fall2017\/wp-json\/wp\/v2\/pages\/43"}],"wp:attachment":[{"href":"https:\/\/courses.ecology.uga.edu\/ecol8000-fall2017\/wp-json\/wp\/v2\/media?parent=223"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}